compare_bws: Compare two bigWig input files

In Bankso/SCAR: SpLiT-ChEC analysis with R

Compare two bigWig input files

Description

Compare two bigWig input files

Usage

compare_bws(
  SCAR_obj,
  outdir = getwd(),
  comp_op = NA,
  bin_size = 1,
  skip_zeros = TRUE,
  skip_non_covered = FALSE,
  scale_factors = NA,
  out_type = NA,
  roi = NA
)

Arguments

SCAR_obj	SCAR object.
outdir	Output directory.'
comp_op	Operation for bamCompare
bin_size	Bin size for coverage summary.
skip_zeros	Skip bins where both files have 0 coverage, TRUE/FALSE
skip_non_covered	Should regions without coverage be skipped.
scale_factors	Takes a named vector, with the name being the sample name, and the value being the scale factor.
out_type	Output file format, bedgraph or bigwig
roi	A specific region of interest to limit the process to

Bankso/SCAR documentation built on Aug. 20, 2022, 5:26 a.m.