bowtie2_index: Bowtie2 Index Generation
In Bankso/SCAR: SpLiT-ChEC analysis with R
View source: R/bowtie_alignment.R
bowtie2_index R Documentation
Bowtie2 Index Generation
Description
Bowtie2 Index Generation
Usage
bowtie2_index(
SCAR_obj,
genome_assembly,
outdir = getwd(),
index_name = "bowtie2_index"
)
Arguments
SCAR_obj
SCAR object.
genome_assembly
Path to genome fasta file.
outdir
Output directory for genome index.
index_name
The naming structure given to the index.
Bankso/SCAR documentation built on Aug. 20, 2022, 5:26 a.m.
R Package Documentation
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View source: R/bowtie_alignment.R
| bowtie2_index | R Documentation |
Bowtie2 Index Generation
Description
Bowtie2 Index Generation
Usage
bowtie2_index( SCAR_obj, genome_assembly, outdir = getwd(), index_name = "bowtie2_index" )
Arguments
SCAR_obj |
SCAR object. |
genome_assembly |
Path to genome fasta file. |
outdir |
Output directory for genome index. |
index_name |
The naming structure given to the index. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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