Man pages for Bankso/SCAR
SpLiT-ChEC analysis with R
| add_bams | Add BAMs to Sample Sheet |
| add_beds | Add BEDs to Sample Sheet |
| add_bgs | Add Bedgraphs to Sample Sheet |
| add_cov | Add coverage tracks to Sample Sheet |
| add_matrix | Add matrix to Sample Sheet |
| add_ovbed | Add overlap beds to Sample Sheet |
| annotate_peaks | Annotate Peaks |
| bowtie2_align | Bowtie2 Alignment |
| bowtie2_index | Bowtie2 Index Generation |
| call_peaks_macs | MACS peak calling |
| call_peaks_SEACR | Peak Calling |
| compare_bws | Compare two bigWig input files |
| fastqc | Quality Control of Fastq Files |
| make_bgs | Make bedgraphs |
| make_matrix | Convert coverage file to matrix |
| make_tracks | Generate coverage tracks |
| make_tracks_opts | Generate coverage tracks |
| pf_analysis | Protected fragment analysis |
| plot_heatmap | Plot matrix output as heatmap |
| plot_profile | Plot matrix output in profile |
| print_message | Standard Message |
| pull_setting | Pull Settings |
| SCAR_maker | SCAR Object Constructor Function |
| SCAR_obj-class | SCAR Class |
| set_settings | Set Settings. |
