studyDefinitionExtensionSettings: function to extract sample/factor/ratio/replicate...

In BenBruyneel/proteinDiscover: ProteinDiscover

function to extract sample/factor/ratio/replicate information.

Description

function to extract sample/factor/ratio/replicate information.

Usage

studyDefinitionExtensionSettings(analysisDef)

Arguments

analysisDef

generated by the analysisDefinition function

Value

a lits of 4 elements:

1. StudyVariablesForGrouping : a data.frame of factors used

2. StudyVariablesForSorting : a data.frame of sorting specification for the factors

3. QuanRatios : a list object of all ratios. Each ratio has the following elements: RatioTable (specifying numerator/denominator), RatioString (for easy info printing), NumeratorSamples & DenominatorSamples specifying which samples are in the numerator and denominator and finally Replicates which contains info on replicates.

4. XML : the actual from which the information comes. This was included because the exact specification for all possible cases is not (yet) known

Note

So far, this function has not been tested for all possible cases/ scenarios.

BenBruyneel/proteinDiscover documentation built on March 16, 2024, 4:36 p.m.