studyDefinitionExtensions: function that extracts information on isotope corrections (if...

In BenBruyneel/proteinDiscover: ProteinDiscover

function that extracts information on isotope corrections (if available)

Description

function that extracts information on isotope corrections (if available)

Usage

studyDefinitionExtensions(analysisDef, correctXML = c("utf-16", "utf-8"))

Arguments

analysisDef

generated by the analysisDefinition function

correctXML

can only have two different values: NA or a two element character vector c("utf-16","utf-8"). During the research into the method descriptions in the XML object it was noticed that the XML::xmlToList gave an error Document labelled UTF-16 but has UTF-8 content. This was solved by replacing the 'utf-16' string by 'utf-8' string in the XML object. This may be a country specific issue, so the function allows setting this parameter to NA will not do the replacement.

Value

NA or a list of two data.frame objects

BenBruyneel/proteinDiscover documentation built on March 16, 2024, 4:36 p.m.