tmt11Channels: helper function to generate the a data.frame of TMT knockout...

In BenBruyneel/proteinDiscover: ProteinDiscover

helper function to generate the a data.frame of TMT knockout strain (TKO) info for other functions. This function generates a data.frame based on the 11-plex TMT TKO knockout

Description

helper function to generate the a data.frame of TMT knockout strain (TKO) info for other functions. This function generates a data.frame based on the 11-plex TMT TKO knockout

Usage

tmt11Channels()

Value

a data.frame with four columns: all are character vectors

Note

the rows define the order of the abundance (etc) columns in the protein, peptide and psms table in a pdResult file. The order is alphabetical in protein & peptide tables, but not in the psms tables: there it is based based on the order of the isotopes

psmsChannels & isotopeChannels columns match each other

BenBruyneel/proteinDiscover documentation built on March 16, 2024, 4:36 p.m.