API for Bio-Core/BioCore.Annotation
BioCore Variant Annotation Package
| Global functions | |
|---|---|
| add_genotype_column | Source code |
| add_protein_change_column | Man page Source code |
| add_read_depth_column | Man page Source code |
| add_sample_name | Man page Source code |
| add_snvid | Man page Source code |
| add_variant_allele_fraction_column | Man page Source code |
| calculate_mutation_rate | Source code |
| create_merged_data | Man page Source code |
| create_protein_change_table | Source code |
| create_recurrence_heatmap | Man page Source code |
| create_recurrence_table | Man page Source code |
| create_variant_signature_barplot | Man page Source code |
| filter_annovar_data | Man page Source code |
| filter_on_depth | Man page Source code |
| filter_on_population | Man page Source code |
| get_annovar_colnames | Man page Source code |
| get_annovar_colnames_hg38 | Source code |
| get_annovar_files | Man page Source code |
| get_coding_mutations | Man page Source code |
| get_field_from_vcf_format_string | Source code |
| get_gene_name | Source code |
| get_protein_change | Source code |
| get_pyrimidine_change | Man page Source code |
| get_read_depth | Man page Source code |
| get_snv | Man page Source code |
| get_variant_allele_fraction | Man page Source code |
| load_annovar_file | Man page Source code |
