get_coding_mutations: Get coding mutations.
In Bio-Core/BioCore.Annotation: BioCore Variant Annotation Package
Description
Usage
Arguments
Value
Author(s)
View source: R/get_coding_mutations.R
Description
A function that parses a variant database and filters any mutation that is a synonymous SNV, unknown, intergenic or an empty string.
Usage
1
get_coding_mutations(data = NULL, filters = c("synonymous SNV", "unknown", "intergenic", ""))
Arguments
data
a dataframe containing variants (required)
filters
a list of functional consequence types to filter (default: "synonymous SNV", "unknown", "intergenic", "")
Value
Returns a dataframe with variants classified as "synonymous SNV", "unknown", "intergenic", or "" removed.
Author(s)
Richard J. de Borja
Bio-Core/BioCore.Annotation documentation built on Feb. 3, 2020, 6:01 p.m.
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Description Usage Arguments Value Author(s)
View source: R/get_coding_mutations.R
Description
A function that parses a variant database and filters any mutation that is a synonymous SNV, unknown, intergenic or an empty string.
Usage
1 | get_coding_mutations(data = NULL, filters = c("synonymous SNV", "unknown", "intergenic", ""))
|
Arguments
data |
a dataframe containing variants (required) |
filters |
a list of functional consequence types to filter (default: "synonymous SNV", "unknown", "intergenic", "") |
Value
Returns a dataframe with variants classified as "synonymous SNV", "unknown", "intergenic", or "" removed.
Author(s)
Richard J. de Borja
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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