add_variant_allele_fraction_column: Add variant allele fraction (VAF) column to dataframe.
In Bio-Core/BioCore.Annotation: BioCore Variant Annotation Package
Description
Usage
Arguments
Value
Author(s)
View source: R/add_variant_allele_fraction_column.R
Description
A function to add the variant allele fraction (VAF) as a separate column using the
VCF FORMAT string.
Usage
1
add_variant_allele_fraction_column(data = NULL, format_column = "vcf_format_sample", vaf_index = 15)
Arguments
data
dataframe containing mutation data (required)
format_column
column name for the FORMAT string (default: vcf_format_sample)
vaf_index
array index containing the variant allele fraction
Value
Returns a dataframe with the VAF column appended and labelled "vaf".
Author(s)
Richard J. de Borja
Bio-Core/BioCore.Annotation documentation built on Feb. 3, 2020, 6:01 p.m.
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Description Usage Arguments Value Author(s)
View source: R/add_variant_allele_fraction_column.R
Description
A function to add the variant allele fraction (VAF) as a separate column using the VCF FORMAT string.
Usage
1 | add_variant_allele_fraction_column(data = NULL, format_column = "vcf_format_sample", vaf_index = 15)
|
Arguments
data |
dataframe containing mutation data (required) |
format_column |
column name for the FORMAT string (default: vcf_format_sample) |
vaf_index |
array index containing the variant allele fraction |
Value
Returns a dataframe with the VAF column appended and labelled "vaf".
Author(s)
Richard J. de Borja
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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