filter_on_population: Filter on population data.
In Bio-Core/BioCore.Annotation: BioCore Variant Annotation Package
Description
Usage
Arguments
Value
Author(s)
View source: R/filter_on_population.R
Description
A function for filtering variants on common population database occurrence.
Usage
1
filter_on_population(data = NULL, exac_threshold = 0.01, g1000_threshold = 0.01, esp_threshold = 0.01, exac="ExAC_ALL", g1000="X1000G_ALL", esp="ESP6500siv2_ALL")
Arguments
data
dataframe containing variant data (required)
exac_threshold
maximum ExAC threshold (default: 0.01)
g1000_threshold
maximum 1000 Genomes threshold (default: 0.01)
esp_threshold
maximum Exome Server Project threshold (default: 0.01)
Value
Returns the variant dataframe with mutations that exceed the maximum threshold removed.
Author(s)
Richard J. de Borja
Bio-Core/BioCore.Annotation documentation built on Feb. 3, 2020, 6:01 p.m.
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Description Usage Arguments Value Author(s)
View source: R/filter_on_population.R
Description
A function for filtering variants on common population database occurrence.
Usage
1 | filter_on_population(data = NULL, exac_threshold = 0.01, g1000_threshold = 0.01, esp_threshold = 0.01, exac="ExAC_ALL", g1000="X1000G_ALL", esp="ESP6500siv2_ALL")
|
Arguments
data |
dataframe containing variant data (required) |
exac_threshold |
maximum ExAC threshold (default: 0.01) |
g1000_threshold |
maximum 1000 Genomes threshold (default: 0.01) |
esp_threshold |
maximum Exome Server Project threshold (default: 0.01) |
Value
Returns the variant dataframe with mutations that exceed the maximum threshold removed.
Author(s)
Richard J. de Borja
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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