get_read_depth: Get the read depth.
In Bio-Core/BioCore.Annotation: BioCore Variant Annotation Package
Description
Usage
Arguments
Value
Author(s)
View source: R/get_read_depth.R
Description
A R function that extracts the read depth from a VCF formatted FORMAT string.
Usage
1
get_read_depth(data = NULL, delimiter = ":", depth_index = 4)
Arguments
data
dataframe containing BioCore SNV pipeline output (required)
delimiter
delimited used in the FORMAT string (default :)
depth_index
index number of the array entry for the depth column (default: 4)
Value
Returns the input dataframe with a read depth column labelled "depth" appended to it.
Author(s)
Richard J. de Borja
Bio-Core/BioCore.Annotation documentation built on Feb. 3, 2020, 6:01 p.m.
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Description Usage Arguments Value Author(s)
View source: R/get_read_depth.R
Description
A R function that extracts the read depth from a VCF formatted FORMAT string.
Usage
1 | get_read_depth(data = NULL, delimiter = ":", depth_index = 4)
|
Arguments
data |
dataframe containing BioCore SNV pipeline output (required) |
delimiter |
delimited used in the FORMAT string (default :) |
depth_index |
index number of the array entry for the depth column (default: 4) |
Value
Returns the input dataframe with a read depth column labelled "depth" appended to it.
Author(s)
Richard J. de Borja
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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