create_recurrence_table: Create a table of recurrently mutated genes.
In Bio-Core/BioCore.Annotation: BioCore Variant Annotation Package
Description
Usage
Arguments
Value
Author(s)
View source: R/create_recurrence_table.R
Description
A function that imports ANNOVAR annotated files merged using create_merged_data and
creates a table with the number of mutations found in genes among samples in decreasing
order of recurrence.
Usage
1
create_recurrence_table(data = NULL, recurrence_threshold = 2)
Arguments
data
dataframe from create_merged_data function (required)
recurrence_threshold
the threshold to cutoff recurrence (default: 2)
Value
Returns a table with samples in the columns, genes and counts as rows in descending
order of recurrence.
Author(s)
Richard J. de Borja
Bio-Core/BioCore.Annotation documentation built on Feb. 3, 2020, 6:01 p.m.
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Description Usage Arguments Value Author(s)
View source: R/create_recurrence_table.R
Description
A function that imports ANNOVAR annotated files merged using create_merged_data and creates a table with the number of mutations found in genes among samples in decreasing order of recurrence.
Usage
1 | create_recurrence_table(data = NULL, recurrence_threshold = 2)
|
Arguments
data |
dataframe from create_merged_data function (required) |
recurrence_threshold |
the threshold to cutoff recurrence (default: 2) |
Value
Returns a table with samples in the columns, genes and counts as rows in descending order of recurrence.
Author(s)
Richard J. de Borja
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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