add_read_depth_column: Add a read depth column to the ANNOVAR output dataframe.
In Bio-Core/BioCore.Annotation: BioCore Variant Annotation Package
Description
Usage
Arguments
Value
Author(s)
View source: R/add_read_depth_column.R
Description
A R function that uses get_read_depth() and appends the depth of coverage value
to the original ANNOVAR dataframe.
Usage
1
add_read_depth_column(data = NULL, format_column = "vcf_format_sample", depth_index=4)
Arguments
data
an ANNOVAR based dataframe (required)
format_column
the column name containing the VCF FORMAT string (default: vcf_format_sample)
depth_index
the array index containing the depth information
Value
Returns the original input dataframe with a "depth" column containing the depth of coverage.
Author(s)
Richard J. de Borja
Bio-Core/BioCore.Annotation documentation built on Feb. 3, 2020, 6:01 p.m.
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Description Usage Arguments Value Author(s)
View source: R/add_read_depth_column.R
Description
A R function that uses get_read_depth() and appends the depth of coverage value to the original ANNOVAR dataframe.
Usage
1 | add_read_depth_column(data = NULL, format_column = "vcf_format_sample", depth_index=4)
|
Arguments
data |
an ANNOVAR based dataframe (required) |
format_column |
the column name containing the VCF FORMAT string (default: vcf_format_sample) |
depth_index |
the array index containing the depth information |
Value
Returns the original input dataframe with a "depth" column containing the depth of coverage.
Author(s)
Richard J. de Borja
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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