get_pyrimidine_change: Get pyrimidine change

In Bio-Core/BioCore.Annotation: BioCore Variant Annotation Package

Description

Return the pyrimidine (i.e. C, T) based change for a given mutation.

Usage

get_pyrimidine_change(x)

Arguments

x	a two character array containing the reference allele and alternate allele as provided by the variant caller

Details

This function can be used with the "apply" statement to provide a variant in the form Ref>Alt.

Value

Returns a string containing Ref>Alt.

Author(s)

Richard J. de Borja

Examples

get_pyrimidine_change(x=c('C', 'T'))
get_pyrimidine_change(x=c('G', 'C'))
get_pyrimidine_change(x=c('A', 'T'))
get_pyrimidine_change(x=c('T', 'C'))

Bio-Core/BioCore.Annotation documentation built on Feb. 3, 2020, 6:01 p.m.