random_connectivity_test: Test bin connectivity

In BlishLab/scriabin: Single-cell resolved interaction analysis through binning

Test bin connectivity

Description

Test bin connectivity

Usage

random_connectivity_test(
  seu_oi = seu_oi,
  SNN = SNN,
  bin = bin,
  split.by = split.by,
  sigtest_cell_types = sigtest_cell_types
)

Arguments

seu_oi	A Seurat object with bin identities in the "bins" column of the meta.data slot
SNN	The SNN to use for connectivity testing
bin	Character string of the bin ID to test
split.by	Name of meta.data column containing the factor by which the dataset will be split
sigtest_cell_types	Name of meta.data column containing the cell type labels to use for connectivity testing

Value

p-value of bin connectivity significance

Examples

random_connectivity_test()

BlishLab/scriabin documentation built on Sept. 16, 2024, 1:19 a.m.