CL-CHEN-Lab/User_interface_for_Kronos_scRT
R-package and Shiny App interface for the analysis of single cell replication timing data

Package index
Search the CL-CHEN-Lab/User_interface_for_Kronos_scRT package
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Functions
122
Source code
51
Man pages
70
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CL-CHEN-Lab/User_interface_for_Kronos_scRT: R-package and Shiny App interface for the analysis of single cell replication timing data
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API

API for CL-CHEN-Lab/User_interface_for_Kronos_scRT
R-package and Shiny App interface for the analysis of single cell replication timing data

Global functions
AdjustCN Man page Source code
AdjustPerCell Man page Source code
Assign_subpop Man page Source code
AverageVariability Man page Source code
BackGround Man page Source code
BamMetrics Man page Source code
BinRepProbPlot Man page Source code
CallCNV Man page Source code
Cluster_enrichment Man page Source code
Decompress_if_needed Man page Source code
FastqToBam Man page Source code
FilterCells Man page Source code
GM12878_Reference Man page
GenomeBinning Man page Source code
HeLa_Reference Man page
HeLa_rep1 Man page
HeLa_rep2 Man page
IdAdapters Man page Source code
Jeff_rep1 Man page
Jeff_rep2 Man page
KCorr_plot Man page Source code
MCF7 Man page
MCF7_Reference Man page
MCF7_subpop1 Man page
MCF7_subpop2 Man page
Plot_bulkRT Man page Source code
Pre_processing Man page Source code
Prepare_G1G2_phase_cells_forBinRepProb Man page Source code
Prepare_S_phase_cells_forBinRepProb Man page Source code
Processing Man page Source code
RT_changes_plot Man page Source code
RT_clustering Man page Source code
RT_tools Man page Source code
Rebin Man page Source code
RebinRT Man page Source code
Replication_state Man page Source code
String_to_Range Man page
T25_75 Man page Source code
TSNE Man page Source code
TW_GenomeAnnotation Man page Source code
TW_RTAnnotation Man page Source code
TenXtoKronos Man page Source code
Twidth Man page Source code
Twidth_barplot Man page Source code
Twidth_extended_plot Man page Source code
Twidth_fit_data Man page Source code
Twidth_pval Man page Source code
Variability Man page
WhoIsWho Man page Source code
binning Man page Source code
cat_levels Man page Source code
diagnostic Man page Source code
extractSubpop Man page
find_known_sequences Man page Source code
load_multiple_df Man page Source code
mergefastq Man page Source code
mutate_sequence Man page
pseudoBulkRT Man page
recover_and_mutate Man page Source code
rejoinSubpop Man page
reshape_and_save Man page Source code
rev_com Man page Source code
right_format Man page
scCNplot Man page Source code
scRT_tools Man page Source code
scRTplot Man page Source code
sequential_trimming Man page Source code
shell_interface Man page Source code
split_into_categoreis Man page
split_subpop Man page Source code
CL-CHEN-Lab/User_interface_for_Kronos_scRT documentation built on Aug. 1, 2022, 2:08 p.m.

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