add_site_sequence | R Documentation |
Add a column with amino acid sequence around a PTM. Value will be
NA if peptide maps to multiple proteins or has multiple PTMs. If padding extends
outside the protein AA sequence, padding will be extended with '_'. The PTM-
centered AA sequence is useful to integrate external databases. Input
is PD output at PSM/peptide level having been passed through parse_PTM_scores
to add 'filtered_pos' column
add_site_sequence(
obj,
proteome_fasta,
master_protein_col = "Master.Protein.Accessions"
)
obj |
|
proteome_fasta |
|
master_protein_col |
|
data.frame
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