get_sequence2protein: Approximate parsimony approach to map sequence to protein...

In CambridgeCentreForProteomics/camprotR: Processing, analysing and visualising CCP proteomics data

Approximate parsimony approach to map sequence to protein across multiple samples

Description

Approximate parsimony approach to map sequence to protein across multiple samples

Usage

get_sequence2protein(seq2prot, seq_col, prot_col)

Arguments

seq2prot	data. Output from read_infiles
seq_col	string Column name for peptide sequence
prot_col	string Column name for protein(s)
master_prot_col	string Column name for master protein(s)

Value

Returns an data.frame object which uniquely maps peptide sequence to master protein

Uses an approximate parsimony approach (e.g least number of

proteins required to account for all observed sequences) to generate a single map from sequence to protein for all samples

CambridgeCentreForProteomics/camprotR documentation built on Jan. 27, 2023, 8:36 p.m.