get_all_mappings: Get all mappings for GO terms

In CambridgeCentreForProteomics/camprotR: Processing, analysing and visualising CCP proteomics data

Get all mappings for GO terms

Description

For a vector of GO terms, obtain all of the ancestor or offspring terms.

Usage

get_all_mappings(go_ids, ontologies, verbose = TRUE, direction = "ancestor")

Arguments

go_ids	character vector. GO terms to use in the format GO:1234567.
ontologies	named character vector. Names = go_ids and values = ontologies e.g. BP, CC, or MF.
verbose	logical.
direction	string Either "ancestor" or "offspring".

Value

Returns a named list of character vectors. Names == GO terms and values == vectors containing all ancestor GO terms for the particular input GO term.

CambridgeCentreForProteomics/camprotR documentation built on Jan. 27, 2023, 8:36 p.m.