expand_terms: Expand data.frame GO terms
In CambridgeCentreForProteomics/camprotR: Processing, analysing and visualising CCP proteomics data
expand_terms R Documentation
Expand data.frame GO terms
Description
Input is a data.frame with all the GO terms annotated to a single protein in
a single column. Output is a new data.frame with all of the GO terms for
that protein (annotated and ancestor).
Usage
expand_terms(go_df, go_col, go2Ancestor)
Arguments
go_df
data.frame for a single protein with a single column where
each row is a single GO term.
go_col
variable. Name of column from the data.frame that
contains the GO terms.
go2Ancestor
named list. Returned by get_all_mappings.
Names == GO terms and values == vectors containing all ancestor GO terms
for the particular input GO term.
Value
Returns a data.frame containing all ancestor GO terms for a
single protein.
CambridgeCentreForProteomics/camprotR documentation built on Jan. 27, 2023, 8:36 p.m.
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| expand_terms | R Documentation |
Expand data.frame GO terms
Description
Input is a data.frame with all the GO terms annotated to a single protein in a single column. Output is a new data.frame with all of the GO terms for that protein (annotated and ancestor).
Usage
expand_terms(go_df, go_col, go2Ancestor)
Arguments
go_df |
|
go_col |
|
go2Ancestor |
|
Value
Returns a data.frame containing all ancestor GO terms for a
single protein.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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