get_enriched_go | R Documentation |
A wrapper function around goseq
to perform
GO term enrichment analysis. See the goseq
documentation
for details. pwf
can be made using nullp
.
Over/underrepresented p-values are automatically
adjusted using method = "BH"
. If gene2cat
is not provided then this
function will default to using the Homo sapiens genome hg19
and will
expect Ensembl gene IDs to have been used to construct the pwf
input.
get_enriched_go(
pwf,
gene2cat = NULL,
...,
shorten_term = TRUE,
shorten_lims = c(1L, 30L)
)
pwf |
|
gene2cat |
|
... |
Other arguments to be passed to |
shorten_term |
|
shorten_lims |
|
Returns a data.frame
of over/underrepresented GO terms.
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