get_notch_per_protein: Summarise the number of sub-notch PSM intensities per protein
In CambridgeCentreForProteomics/camprotR: Processing, analysing and visualising CCP proteomics data
get_notch_per_protein R Documentation
Summarise the number of sub-notch PSM intensities per protein
Description
The distribution of TMT intensities obtained by Orbitrap has
been observed to have a 'notch' where few values are observed. This function
summarises the number of sub-notch values observed per protein
Usage
get_notch_per_protein(
obj,
master_prot_col = "Master.Protein.Accessions",
notch_upper = 5.75
)
Arguments
obj
MSnSet containing PSM-level TMT intensities.
master_prot_col
character. Column name for master proteins.
notch_upper
numeric. Upper boundary of notch.
Value
data.frame Summarises # PSMs above/below notch for each protein
CambridgeCentreForProteomics/camprotR documentation built on July 7, 2024, 2:13 a.m.
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| get_notch_per_protein | R Documentation |
Summarise the number of sub-notch PSM intensities per protein
Description
The distribution of TMT intensities obtained by Orbitrap has been observed to have a 'notch' where few values are observed. This function summarises the number of sub-notch values observed per protein
Usage
get_notch_per_protein(
obj,
master_prot_col = "Master.Protein.Accessions",
notch_upper = 5.75
)
Arguments
obj |
|
master_prot_col |
|
notch_upper |
|
Value
data.frame Summarises # PSMs above/below notch for each protein
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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