API for CambridgeCentreForProteomics/camprotR
Processing, analysing and visualising CCP proteomics data

Global functions
add_PTM_positions Man page Source code
add_peptide_positions Man page Source code
add_site_sequence Man page Source code
append_fasta Man page Source code
camprotR Man page
camprotR-package Man page
center_normalise_to_ref Man page Source code
check_uniprot_job Source code
check_uniprot_release Man page Source code
compare_IDs Man page Source code
compare_sequences_per_protein Man page Source code
compare_single_master Man page Source code
count_features_per_protein Man page Source code
dep_gene2cat Man page
dep_results Man page
determine_ancestor_function Man page Source code
determine_offspring_function Man page Source code
download_ccp_crap Man page Source code
estimate_go_overrep Man page Source code
estimate_incorporation Man page Source code
expand_terms Man page Source code
filter_TMT_PSMs Man page Source code Source code
get_all_mappings Man page Source code
get_ancestor_go Man page Source code
get_cat_palette Man page Source code
get_ccp_crap Man page Source code
get_enriched_go Man page Source code
get_incorporation Man page Source code
get_medians Man page Source code
get_notch_per_protein Man page Source code
get_parsimony_pep2prot Man page Source code
get_psm_metrics Man page Source code
get_psm_silac_mod_regex Man page Source code
get_ratio Man page Source code
get_sequence Man page Source code
get_sequence2protein Man page Source code
lfq_oops_rnase_pep Man page
lfq_oops_rnase_psm Man page
make_fasta Man page Source code
match_proteins Man page Source code
message_parse Source code
parse_PTM_scores Man page Source code
parse_features Man page Source code
pep_oops_1 Man page
pep_oops_2 Man page
pep_oops_3 Man page
pep_oops_4 Man page
pep_silac_p0 Man page
pep_silac_p4 Man page
plot_TMT_notch Man page Source code
plot_below_notch_per_prot Man page Source code
plot_fraction_below_notch_per_prot Man page Source code
plot_go Man page Source code
plot_incorporation Man page Source code
plot_missing_SN Man page Source code
plot_missing_SN_per_sample Man page Source code
plot_quant Man page Source code
psm_oops_1 Man page
psm_oops_2 Man page
psm_oops_3 Man page
psm_oops_4 Man page
psm_silac_p4 Man page
psm_tmt_phospho Man page
psm_tmt_total Man page
psm_to_peptide_style_modifications Man page Source code
read_infiles Man page Source code
remove_dots Man page Source code
remove_redundant_go Man page Source code
remove_silac_modifications Man page Source code
remove_x Man page Source code
restrict_features_per_protein Man page Source code
silac_psm_seq_int Man page Source code
sub_crap Man page Source code
theme_camprot Man page Source code
theme_csd Man page Source code
update_average_sn Man page Source code
CambridgeCentreForProteomics/camprotR documentation built on Jan. 27, 2023, 8:36 p.m.