parse_PTM_scores | R Documentation |
Extract PTM information from the PTM probabilities column in the output from PD and add new columns with this information. Also optionally prints a summary of how many features (PSMs/peptides) pass a given probability threshold
parse_PTM_scores(
obj,
threshold = 95,
ptm_col = "PhosphoRS.Best.Site.Probabilities",
prob_split = "; |: ",
collapse_delimiter = ";",
verbose = TRUE
)
obj |
|
threshold |
|
ptm_col |
|
prob_split |
|
collapse_delimiter |
|
verbose |
Set TRUE to print log of events to console |
data.frame
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