sub_crap: Insert cRAP numbers into a character vector

In CambridgeCentreForProteomics/camprotR: Processing, analysing and visualising CCP proteomics data

Insert cRAP numbers into a character vector

Description

This function takes a character vector where each element is roughly in the form of a UniProt header e.g. "sp|XXXXXX|YYYY_YYYY Text goes here" and substitutes a cRAP number in place of the first | symbol, e.g. "sp|cRAP001|XXXXXX|YYYY_YYYY Text goes here".

Usage

sub_crap(x, start = 1, width = 3)

Arguments

x	⁠character vector⁠, each element must have two | symbols with some text in between e.g. ⁠|sometext|⁠.
start	numeric, the number to increment from, default is 1
width	numeric, how many digits the cRAP number should be, default is 3

Value

Returns a ⁠character vector⁠ the same length as x.

Examples

# basic use
sub_crap(c("|sometext|", "|moretext|"))

# start from a different number
sub_crap(c("|sometext|", "|moretext|"), start = 88)

# increase number width
sub_crap(c("|sometext|", "|moretext|"), start = 1111, width = 4)

CambridgeCentreForProteomics/camprotR documentation built on July 7, 2024, 2:13 a.m.