update_average_sn: Adds new feature describing the average reporter Signal/Noise...
In CambridgeCentreForProteomics/camprotR: Processing, analysing and visualising CCP proteomics data
View source: R/filter_TMT_PSMs.R
update_average_sn R Documentation
Adds new feature describing the average reporter Signal/Noise ratio.
Description
PD column Average.Reporter.SN is NA when any tags have missing
values. This function adds an average reporter SN column which ignores missing
values. The assumption is that the intensity values in the exprs matrix
are Signal/Noise ratios, as reported by PD by default
Usage
update_average_sn(obj, sn_col = "Average.Reporter.SN")
Arguments
obj
MSnSet. Contains PSMs for TMT quantification
sn_col
string. Name of output column containing the average signal:noise.
Value
Returns an MSnSet with the average SN included as a new feature column.
CambridgeCentreForProteomics/camprotR documentation built on Jan. 27, 2023, 8:36 p.m.
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View source: R/filter_TMT_PSMs.R
| update_average_sn | R Documentation |
Adds new feature describing the average reporter Signal/Noise ratio.
Description
PD column Average.Reporter.SN is NA when any tags have missing
values. This function adds an average reporter SN column which ignores missing
values. The assumption is that the intensity values in the exprs matrix
are Signal/Noise ratios, as reported by PD by default
Usage
update_average_sn(obj, sn_col = "Average.Reporter.SN")
Arguments
obj |
|
sn_col |
|
Value
Returns an MSnSet with the average SN included as a new feature column.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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