create_model_masks: Create model masks

In CshlSiepelLab/tuSelecter2: Deconvolution of Expression for Nascent RNA Sequencing Data

Description

Function for generating masks

Usage

create_model_masks(
  transcript_models,
  strand,
  mask_start_bins = NULL,
  mask_end_bins = NULL
)

Arguments

transcript_models	A list of matricies containing transcript models.
strand	a vector containing one entry per group of transcript models indicating the strand.
mask_start_bins	A numeric vertor with length two which giving the number of bins should be masked near the start of a transcript. The first integer is the number of bins will be masked inside the transcript, while the second interger is the number outside the transcript. Default c(0, 0).
mask_end_bins	A numeric vertor with length two which giving the number of bins should be masked near the end of a transcript. The first integer is the number of bins will be masked inside the transcript, while the second interger is the number outside the transcript. Default c(0, 0).

Value

A list of vectors, where each vector indicates the bins that should be masked

CshlSiepelLab/tuSelecter2 documentation built on July 18, 2021, 5:09 p.m.