save_txdb: Cache a TxDb

In CshlSiepelLab/tuSelecter2: Deconvolution of Expression for Nascent RNA Sequencing Data

Cache a TxDb

Description

Save a txdb in the local cache.

Usage

save_txdb(
  txdb,
  species_name = NULL,
  genome_name = NULL,
  annotation_version = NULL,
  force = FALSE
)

Arguments

txdb	a TxDb object
species_name	the name of the species (defaults to using the organism name from the txdb if none specified).
genome_name	the name of the genome (defaults to using the BioMart dataset version from the txdb if none specified).
annotation_version	a version id (defaults to using the BioMart database version if none specified)
force	boolean that forces writing of txdb even if matching one already exists (default: FALSE)

See Also

cache_get_dir

CshlSiepelLab/tuSelecter2 documentation built on June 2, 2025, 7:09 a.m.