save_txdb: Cache a TxDb

Description Usage Arguments See Also

View source: R/txdb_handling.R

Description

Save a txdb in the local cache.

Usage

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save_txdb(
  txdb,
  species_name = NULL,
  genome_name = NULL,
  annotation_version = NULL,
  force = FALSE
)

Arguments

txdb

a TxDb object

species_name

the name of the species (defaults to using the organism name from the txdb if none specified).

genome_name

the name of the genome (defaults to using the BioMart dataset version from the txdb if none specified).

annotation_version

a version id (defaults to using the BioMart database version if none specified)

force

boolean that forces writing of txdb even if matching one already exists (default: FALSE)

See Also

cache_get_dir


CshlSiepelLab/tuSelecter2 documentation built on July 18, 2021, 5:09 p.m.