get_data: Get data

Description Usage Arguments Value

Description

Retrives data for plotting. Returned ranges may go a bit outside the queried ones if the overlapping bins do not perfectly align with the user provided boundries

Usage

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get_data(data_source, chrom, start, end)

## S4 method for signature 'transcript_quantifier'
get_data(data_source, chrom, start, end)

## S4 method for signature 'character'
get_data(data_source, chrom, start, end)

Arguments

data_source

a transcript_quantifier-class object or string giving the path to a bigwig file

chrom

the chromosome of your query region (single value)

start

the start position of your query region (single value)

end

the end position of your query region (single value)

Value

a GRanges-class objects with the read counts in the value column


CshlSiepelLab/tuSelecter2 documentation built on July 18, 2021, 5:09 p.m.