create_transcript_models: Create transcript models

In CshlSiepelLab/tuSelecter2: Deconvolution of Expression for Nascent RNA Sequencing Data

Create transcript models

Description

Function for generating binned transcript models given a set of bins

Usage

create_transcript_models(transcripts, bins, bin_size, transcript_name_column)

Arguments

transcripts	A GRanges-class object
bins	A GRangesList-class object, each element in the list contains the bins for each corresponding group of transcripts
bin_size	width of bins
transcript_name_column	A string that indicates which column in the GRanges object contain the transcript names

Value

A list of matrices where each row in the matrix corresponds to a bin and each column is a transcript

CshlSiepelLab/tuSelecter2 documentation built on June 2, 2025, 7:09 a.m.