gene_abundance: View gene abundances
In CshlSiepelLab/tuSelecter2: Deconvolution of Expression for Nascent RNA Sequencing Data
gene_abundance R Documentation
View gene abundances
Description
Produces a table with estimated gene abundances for a given
transcript_quantifier-class object if gene identifiers are
present
Usage
gene_abundance(tq, norm_method = c("tpm", "tmm"))
## S4 method for signature 'transcript_quantifier'
gene_abundance(tq, norm_method = c("tpm", "tmm"))
Arguments
tq
A transcript_quantifier-class object
norm_method
type of normalization to use: "tpm" or "tmm". Defaults
to "tpm". Described further in details.
CshlSiepelLab/tuSelecter2 documentation built on June 2, 2025, 7:09 a.m.
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| gene_abundance | R Documentation |
View gene abundances
Description
Produces a table with estimated gene abundances for a given
transcript_quantifier-class object if gene identifiers are
present
Usage
gene_abundance(tq, norm_method = c("tpm", "tmm"))
## S4 method for signature 'transcript_quantifier'
gene_abundance(tq, norm_method = c("tpm", "tmm"))
Arguments
tq |
A transcript_quantifier-class object |
norm_method |
type of normalization to use: "tpm" or "tmm". Defaults to "tpm". Described further in details. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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