gene_abundance: View gene abundances

Description Usage Arguments

Description

Produces a table with estimated gene abundances for a given transcript_quantifier-class object if gene identifiers are present

Usage

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gene_abundance(tq, norm_method = c("tpm", "tmm"))

## S4 method for signature 'transcript_quantifier'
gene_abundance(tq, norm_method = c("tpm", "tmm"))

Arguments

tq

A transcript_quantifier-class object

norm_method

type of normalization to use: "tpm" or "tmm". Defaults to "tpm". Described further in details.


CshlSiepelLab/tuSelecter2 documentation built on July 18, 2021, 5:09 p.m.