predict_inactive_transcripts: Return list of inactive TSS

Description Usage Arguments Value

View source: R/tss_predictor.R

Description

Predicts inactive transcripts based on GRO/PRO-seq data using a p re-trained convolutional neural net. For stability reasones, this function enforces the use of the CPU if a TF session has not already been started. Given the small size of the network this shouldn not impact performance significantly.

Usage

1
predict_inactive_transcripts(tq, bigwig_plus, bigwig_minus)

Arguments

tq

A transcript_quantifier-class object

bigwig_plus

the path to a bigwig for reads on the plus strand

bigwig_minus

the path to a bigwig for reads on the minus strand

Value

a vector of inactive transcript identifiers


CshlSiepelLab/tuSelecter2 documentation built on July 18, 2021, 5:09 p.m.