predict_inactive_transcripts: Return list of inactive TSS

In CshlSiepelLab/tuSelecter2: Deconvolution of Expression for Nascent RNA Sequencing Data

Return list of inactive TSS

Description

Predicts inactive transcripts based on GRO/PRO-seq data using a p re-trained convolutional neural net. For stability reasones, this function enforces the use of the CPU if a TF session has not already been started. Given the small size of the network this shouldn not impact performance significantly.

Usage

predict_inactive_transcripts(tq, bigwig_plus, bigwig_minus)

Arguments

tq	A transcript_quantifier-class object
bigwig_plus	the path to a bigwig for reads on the plus strand
bigwig_minus	the path to a bigwig for reads on the minus strand

Value

a vector of inactive transcript identifiers

CshlSiepelLab/tuSelecter2 documentation built on June 2, 2025, 7:09 a.m.