reduce_transcript_models: Reduce transcript models

In CshlSiepelLab/tuSelecter2: Deconvolution of Expression for Nascent RNA Sequencing Data

Reduce transcript models

Description

Combine identical transcript models and get non-redundent and reduced transcript models

Usage

reduce_transcript_models(
  transcript_models_ls,
  bin_operation = c("round", "floor", "ceiling")
)

Arguments

transcript_models_ls	A list of matrices where each row in the matrix corresponds to a bin and each column is a transcript.
bin_operation	Three different modes to deal with decimals in the transript model (due to partial overlap of the first or last exon and bins). Either "ceiling", "floor", or "round" (default: "round").

Value

A list of matrices holding the reduced transcript models and a dataframe holding each transcript belongs to which group and reduced model.

CshlSiepelLab/tuSelecter2 documentation built on June 2, 2025, 7:09 a.m.