View source: R/dataframe_summary_events_velocity.r View source: R/.ipynb_checkpoints/dataframe_summary_events_velocity-checkpoint.r
dataframe_summary_events_velocity | R Documentation |
dataframe_summary_events_velocity creates one table with all events between the segments.
The dataframe_summary_events_velocity creates one table with the following columns: event, features, p_value, event_position, event_duration, position, region, gene, locus_tag, strand, TU, segment_1, segment_2, length, velocity_ratio.
dataframe_summary_events_velocity(data, data_annotation)
data |
SummarizedExperiment: the input data frame with correct format. |
data_annotation |
dataframe: dataframe from processed gff3 file. |
String, event type.
Integer, p_value of the event.
Integer, p_value adjusted.
Integer, the position of event, calculated dividing the last position of the first fragment and the first position of the next fragment on 2.
Integer, the ratio value of velocity from 2 delay fragments
String, region annotation covering the fragments.
String, gene annotation covering the fragments.
String, locus_tag annotation covering the fragments.
Boolean. The bin/probe specific strand (+/-).
String, The overarching transcription unit.
String, the first segment of the event, includes the segment, TU, delay fragment in case of ps or iTSS_I. The rest of the events include HL fragment and could be extended intensity fragment.
String, the second fragment of the two of fragments subjected to analysis
Integer, the difference (min) between 2 delay fragment when ps or iTSS_I happen.
Integer, length in position (nt), calculated by the difference between the last position of the first fragment and the first position of the second fragment.
Integer, number of fragements involved on the event.
if(!require(SummarizedExperiment)){
suppressPackageStartupMessages(library(SummarizedExperiment))
}
data(stats_minimal)
dataframe_summary_events_velocity(data = stats_minimal,
data_annotation = metadata(stats_minimal)$annot[[1]])
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