preprocess_e_coli: The result of rifi_preprocess for E.coli example data A...

In CyanolabFreiburg/rifi: 'rifi' analyses data from rifampicin time series created by microarray or RNAseq

The result of rifi_preprocess for E.coli example data A SummarizedExperiment containing the output from rifi_penalties including the logbook and the four penalty objects as metadata. A list containing the output from rifi_preprocess, including the inp and the modified input_df.

Description

The result of rifi_preprocess for E.coli example data A SummarizedExperiment containing the output from rifi_penalties including the logbook and the four penalty objects as metadata. A list containing the output from rifi_preprocess, including the inp and the modified input_df.

Usage

data(preprocess_e_coli)

Format

A SummarizedExperiment:

inp:

the SummarizedExperiment:

ID:

The bin/probe specific ID

position:

The bin/probe specific position

intensity:

The relative intensity at time point 0

probe_TI:

An internal value to determine which fitting model is applied

flag:

Information on which fitting model is applied

postion_segment:

The position based segment

fit_obj_TI:

the fit object for the TI fit:

0:

relative intensities at 0 min

1:

relative intensities at 1 min

10:

relative intensities at 10 min

15:

relative intensities at 15 min

2:

relative intensities at 2 min

20:

relative intensities at 20 min

3:

relative intensities at 3 min

4:

relative intensities at 4 min

5:

relative intensities at 5 min

6:

relative intensities at 6 min

8:

relative intensities at 8 min

ID:

The bin/probe specific ID

position:

The bin/probe specific position

filtration:

indicator wether the replicate is filtered or not

Source

https://github.com/CyanolabFreiburg/rifi

CyanolabFreiburg/rifi documentation built on May 7, 2023, 7:53 p.m.