fragmentation_e_coli: The result of rifi_fragmentation for E.coli example data A...

In CyanolabFreiburg/rifi: 'rifi' analyses data from rifampicin time series created by microarray or RNAseq

The result of rifi_fragmentation for E.coli example data A SummarizedExperiment containing the output from rifi_fragmentation as an extension of rowRanges

Description

The result of rifi_fragmentation for E.coli example data A SummarizedExperiment containing the output from rifi_fragmentation as an extension of rowRanges

Usage

data(fragmentation_e_coli)

Format

rowRanges of the SummarizedExperiment with 290 rows and 22 variables:

ID:

The bin/probe specific ID

position:

The bin/probe specific position

intensity:

The relative intensity at time point 0

probe_TI:

An internal value to determine which fitting model is applied

flag:

Information on which fitting model is applied

position_segment:

The position based segment

delay:

The delay value of the bin/probe

half_life:

The half-life of the bin/probe

TI_termination_factor:

String, the factor of TI fragment

delay_fragment:

The delay fragment the bin belongs to

velocity_fragment:

The velocity value of the respective delay fragment

intercept:

The vintercept of fit through the respective delay fragment

slope:

The slope of the fit through the respective delay fragment

HL_fragment:

The half-life fragment the bin belongs to

HL_mean_fragment:

The mean half-life value of the respective half-life fragment

intensity_fragment:

The intensity fragment the bin belongs to

intensity_mean_fragment:

The mean intensity value of the respective intensity fragment

TU:

The overarching transcription unit

TI_termination_fragment:

The TI fragment the bin belongs to

TI_mean_termination_factor:

The mean termination factor of the respective TI fragment

seg_ID:

The combined ID of the fragment

Source

https://github.com/CyanolabFreiburg/rifi

CyanolabFreiburg/rifi documentation built on May 7, 2023, 7:53 p.m.