preprocess_synechocystis_6803: The result of rifi_preprocess for Synechocystis 6803 example...

In CyanolabFreiburg/rifi: 'rifi' analyses data from rifampicin time series created by microarray or RNAseq

The result of rifi_preprocess for Synechocystis 6803 example data is a A SummarizedExperiment containing the output of rifi_preprocess as an extention to rowRanges

Description

The result of rifi_preprocess for Synechocystis 6803 example data is a A SummarizedExperiment containing the output of rifi_preprocess as an extention to rowRanges

Usage

data(preprocess_synechocystis_6803)

Format

A SummarizedExperiment:

inp:

the SummarizedExperiment:

ID:

The bin/probe specific ID

position:

The bin/probe specific position

strand:

The bin/probe specific strand

intensity:

The relative intensity at time point 0

probe_TI:

An internal value to determine which fitting model is applied

flag:

Information on which fitting model is applied

postion_segment:

The position based segment

fit_obj_TI:

the fit object for the TI fit:

0:

relative intensities at 0 min

2:

relative intensities at 2 min

4:

relative intensities at 4 min

8:

relative intensities at 8 min

16:

relative intensities at 16 min

32:

relative intensities at 32 min

64:

relative intensities at 64 min

ID:

The bin/probe specific ID

position:

The bin/probe specific position

filtration:

indicator wether the replicate is filtered or not

Source

https://github.com/CyanolabFreiburg/rifi

CyanolabFreiburg/rifi documentation built on May 7, 2023, 7:53 p.m.