fit_synechocystis_6803: The result of rifi_fit for Synechocystis 6803 example data A...

In CyanolabFreiburg/rifi: 'rifi' analyses data from rifampicin time series created by microarray or RNAseq

The result of rifi_fit for Synechocystis 6803 example data A SummarizedExperiment containing the output from rifi_fit as an extension of rowRanges and metadata.

Description

The result of rifi_fit for Synechocystis 6803 example data A SummarizedExperiment containing the output from rifi_fit as an extension of rowRanges and metadata.

Usage

data(fit_synechocystis_6803)

Format

Three data frames with 3000 rows and 10 variables, 2811 rows and 5 variables, and 189 rows and 9 variable are generated. The columns of the first data frame are added to the rowRanges and the rest are added as metadata.

inp:

the SummarizedExperiment:

ID:

The bin/probe specific ID

position:

The bin/probe specific position

strand:

The bin/probe specific strand

intensity:

The relative intensity at time point 0

probe_TI:

An internal value to determine which fitting model is applied

flag:

Information on which fitting model is applied

postion_segment:

The position based segment

delay:

The delay value of the bin/probe

half_life:

The half-life of the bin/probe

TI_termination_factor:

String, the factor of TI fragment

fit_obj_STD:

the fit object for the standard fit:

ID:

The bin/probe specific ID

delay:

The delay value of the bin/probe

half_life:

The half-life of the bin/probe

inty_S0:

The relative intensity at time point 0

intyf:

The background value of the fit

fit_obj_TI:

the fit object for the TI fit:

delay:

The delay value of the bin/probe

ti_delay:

The ti-delay value of the bin/probe

half_life:

The half-life of the bin/probe

ti_value:

The ti-value of the bin/probe

TI_termination_factor:

String, the factor of TI fragment

synthesis_rate:

The synthesis rate of the bin/probe

TI_background:

The background value of the fit

position:

The bin/probe specific position

ID:

The bin/probe specific ID

Source

https://github.com/CyanolabFreiburg/rifi

CyanolabFreiburg/rifi documentation built on May 7, 2023, 7:53 p.m.