CyanolabFreiburg/rifi
'rifi' analyses data from rifampicin time series created by microarray or RNAseq

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Search the CyanolabFreiburg/rifi package
Vignettes
Functions
259
Source code
120
Man pages
63
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CyanolabFreiburg/rifi: 'rifi' analyses data from rifampicin time series created by microarray or RNAseq
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API

API for CyanolabFreiburg/rifi
'rifi' analyses data from rifampicin time series created by microarray or RNAseq

Global functions
TI_fit Man page Source code
TI_frag_threshold Source code Source code
TU_annotation Source code Source code
TUgether Man page Source code Source code
annotation_function_df Source code Source code
annotation_function_event Source code Source code
annotation_plot Source code Source code
apply_Ttest_delay Man page Source code Source code
apply_ancova Man page Source code Source code
apply_event_position Man page Source code Source code
apply_manova Man page Source code Source code
apply_t_test Man page Source code Source code
apply_t_test_ti Man page Source code Source code
arrange_byGroup Source code Source code
assert Source code Source code
char_TI Source code Source code
check_input Man page Source code Source code
coverage_function Source code Source code
dataframe_summary Man page Source code Source code
dataframe_summary_TI Man page Source code Source code
dataframe_summary_events Man page Source code Source code
dataframe_summary_events_HL_int Man page Source code Source code
dataframe_summary_events_ps_itss Man page Source code Source code
dataframe_summary_events_velocity Man page Source code Source code
decode_FLT Source code Source code
delay_mean Source code Source code
empty_boxes Source code Source code
empty_data_negative Source code Source code
empty_data_positive Source code Source code
encode_FLT Source code Source code
event_dataframe Man page Source code Source code
example_input_e_coli Man page
example_input_minimal Man page
example_input_synechocystis_6803 Man page
filtration_below_backg Source code Source code
finding_PDD Man page Source code Source code
finding_TI Man page Source code Source code
finding_above_backg Source code Source code
fit_e_coli Man page
fit_minimal Man page
fit_synechocystis_6803 Man page
fold_change Man page Source code Source code
fragment_HL Man page Source code Source code
fragment_HL_pen Source code Source code
fragment_TI Man page Source code Source code
fragment_TI_pen Source code Source code
fragment_delay Man page Source code Source code
fragment_delay_pen Source code Source code
fragment_function Source code Source code
fragment_inty Man page Source code Source code
fragment_inty_pen Source code Source code
fragmentation_e_coli Man page
fragmentation_minimal Man page
fragmentation_synechocystis_6803 Man page
function_TU_arrow Source code Source code
gene_annot_function Source code Source code
generic_filter_BG Source code Source code
genomeSize Source code Source code
gff3_preprocess Man page Source code Source code
indice_function Source code Source code
inp_df Source code Source code
inp_order Source code Source code
label_log2_function Source code Source code
label_square_function Source code Source code
limit_function Source code Source code
make_df Man page Source code Source code
make_pen Man page Source code Source code
manova_function Source code Source code
meanPosition Source code Source code
min_value Source code Source code
my_arrow Source code Source code
my_segment_NS Source code Source code
my_segment_T Source code Source code
negative_strand_function Source code Source code
nls2_fit Man page Source code Source code
outlier_plot Source code
penalties_e_coli Man page
penalties_minimal Man page
penalties_synechocystis_6803 Man page
plot_nls2_function Source code Source code
position_function Source code Source code
positive_strand_function Source code Source code
predict_ps_itss Man page Source code Source code
preprocess_e_coli Man page
preprocess_minimal Man page
preprocess_synechocystis_6803 Man page
regr Source code Source code
relativity Source code Source code
res_minimal Man page
rifi_fit Man page Source code Source code
rifi_fragmentation Man page Source code Source code
rifi_penalties Man page Source code Source code
rifi_preprocess Man page Source code Source code
rifi_stats Man page Source code Source code
rifi_summary Man page Source code Source code
rifi_visualization Man page Source code Source code
rifi_wrapper Man page Source code Source code
score_fun_ave Source code Source code
score_fun_increasing Source code Source code
score_fun_linear Source code Source code
score_fun_linear_PDD Source code Source code
se Source code Source code
secondaryAxis Source code Source code
segment_pos Man page Source code Source code
slope_function Source code Source code
splitGenome_function Source code Source code
stats_e_coli Man page
stats_minimal Man page
stats_synechocystis_6803 Man page
strand_function Source code Source code
strand_selection Source code Source code
summary_e_coli Man page
summary_minimal Man page
summary_synechocystis_6803 Man page
synthesis_r_Function Source code Source code
t_test_function Source code Source code
terminal_plot_lm Source code Source code
tmp_df_rev Source code Source code
velo_function Source code Source code
velocity_fun Source code Source code
viz_pen_obj Man page Source code Source code
wrapper_e_coli Man page
wrapper_minimal Man page
wrapper_summary_synechocystis_6803 Man page
CyanolabFreiburg/rifi documentation built on May 7, 2023, 7:53 p.m.

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