rifi_summary: =========================================================================...

In CyanolabFreiburg/rifi: 'rifi' analyses data from rifampicin time series created by microarray or RNAseq

========================================================================= rifi_summary

rifi_summary wraps conveniently and summarize all rifi outputs

Description

rifi_summary wraps the functions:

1. event_dataframe

2. dataframe_summary

3. dataframe_summary_events

4. dataframe_summary_events_HL_int

5. dataframe_summary_events_ps_itss

6. dataframe_summary_events_velocity

7. dataframe_summary_TI

Usage

rifi_summary(inp, data_annotation = metadata(inp)$annot[[1]])

Arguments

inp	SummarizedExperiment: the input data frame with correct format.
data_annotation	dataframe: gff3 dataframe after processing.

Value

WIP

See Also

event_dataframe

dataframe_summary

dataframe_summary_events

dataframe_summary_events_HL_int

dataframe_summary_events_ps_itss

dataframe_summary_events_velocity

dataframe_summary_TI

Examples

data(stats_minimal)
if(!require(SummarizedExperiment)){
suppressPackageStartupMessages(library(SummarizedExperiment))
}
rifi_summary(inp = stats_minimal, data_annotation = 
metadata(stats_minimal)$annot[[1]])

CyanolabFreiburg/rifi documentation built on May 7, 2023, 7:53 p.m.