penalties_e_coli: The result of rifi_penalties for E.coli example data. A...

In CyanolabFreiburg/rifi: 'rifi' analyses data from rifampicin time series created by microarray or RNAseq

The result of rifi_penalties for E.coli example data. A SummarizedExperiment containing the output from rifi_penalties including the logbook and the four penalty objects as metadata.

Description

The result of rifi_penalties for E.coli example data. A SummarizedExperiment containing the output from rifi_penalties including the logbook and the four penalty objects as metadata.

Usage

data(penalties_e_coli)

Format

A list with 5 items:

logbook:

The logbook vector containing all penalty information

pen_obj_delay:

A list with 4 items:

logbook:

The logbook vector containing all penalty information

delay_penalties:

a vetor with the delay penalty and delay outlier penalty

correct:

a matrix of the correct splits

wrong:

a matrix of the incorrect splits

pen_obj_HL:

A list with 4 items:

logbook:

The logbook vector containing all penalty information

HL_penalties:

a vetor with the half-life penalty and half-life outlier penalty

correct:

a matrix of the correct splits

wrong:

a matrix of the incorrect splits

pen_obj_inty:

A list with 4 items:

logbook:

The logbook vector containing all penalty information

inty_penalties:

a vetor with the intensity penalty and intensity outlier penalty

correct:

a matrix of the correct splits

wrong:

a matrix of the incorrect splits

pen_obj_TI:

A list with 4 items:

logbook:

The logbook vector containing all penalty information

TI_penalties:

a vetor with the TI penalty and TI outlier penalty

correct:

a matrix of the correct splits

wrong:

a matrix of the incorrect splits

Source

https://github.com/CyanolabFreiburg/rifi

CyanolabFreiburg/rifi documentation built on May 7, 2023, 7:53 p.m.