segment_pos: =========================================================================...

In CyanolabFreiburg/rifi: 'rifi' analyses data from rifampicin time series created by microarray or RNAseq

========================================================================= segment_pos

segment_pos divides all IDs by position into position_segments

Description

segment_pos adds the column "position_segment" to the rowRanges. To reduce run time, the data is divided by regions of no expression larger than "dist" nucleotides.

Usage

segment_pos(inp, dista = 300)

Arguments

inp	SummarizedExperiment: the input.
dista	integer: the amount of nucleotides defining the gap. Default is 300.

Value

The SummarizedExperiment object:

ID:	The bin/probe specific ID
position:	The bin/probe specific position
intensity:	The relative intensity at time point 0
probe_TI:	An internal value to determine which fitting model is applied
flag:	Information on which fitting model is applied
position_segment:	The position based segment

Examples

data(preprocess_minimal)
segment_pos(inp = preprocess_minimal, dista = 300)

CyanolabFreiburg/rifi documentation built on May 7, 2023, 7:53 p.m.