CalculateMat | Chain all calculation about one dose-response matrix |
CalculateSens | Calculate relative inhibition (RI) for dose-response curve |
CalculateTemplate | Calculate Drug Combination data in template format |
CellVersion | Check Cellosaurus XML file version. |
CheckCell | Check whether input cell lines are archived in DrugComb |
CheckDisease | Check whether input diseases are archived in DrugComb |
CheckDrug | Check whether input drugs are archived in DrugComb |
CheckTemplate | Check the input template |
CheckTissue | Check whether input tissues are archived in DrugComb |
ChemblVersion | Check version of ChEMBL database |
drugcomb | Identifiers in DrugComb |
GenerateCell | Generate "cell_line" and "cell_id" tables |
GetAccession | Extract the Cellosaurus accession ID of one cell line. |
GetAllSrcIds | Get all src_ids |
GetCell | Extract the nodes containing information of inputted cell... |
GetCellInfo | Extract cell line information |
GetCellName | Extract primary name and synonyms of one cell line. |
GetChembl | Get information from ChEMBL |
GetChemblPhase | Get max clinical trial phase from ChEMBL ID |
GetCid | Match CID according to other identifiers |
GetDisease | Extract the disease information of one cell line. |
GetIds | Get other identifiers from InChIKey |
GetPubchemPro | Get properties of drugs |
GetPubmed | Get publication information from Pubmed |
GetPubNames | Get drug synonyms from PubChem |
GetPubPhase | Get max clinical trial phase from Pubchem |
GetPubSynonymFromName | Get drug synonyms from PubChem by Drug names |
GetTissue | Extract the source tissue of one cell line. |
ImputeIC50 | Impute missing value at IC50 concentration of drug |
MatchCellAcc | Match cell line name with cellosaurus accession |
own_log | CSS facilitate function - log calculation (nature based) LL.4... |
own_log2 | CSS facilitate function - log (nature based) calculation L.4... |
ParCalculateTemplate | Parallel Calculate Drug Combination data in template format |
ParseCell | Parse the Cellosaurus XML file |
PredictResponse | Predict response value at certain drug dose |
RIConfidenceInterval | Calculate Confidence Interval of RI |
scoreCurve | CSS facilitate function - scoreCurve for curves fitted by... |
scoreCurve.L4 | CSS facilitate function - scoreCurve for curves fitted by L.4 |
smoothing | Smoothing the dose response or synergy score surface |
TidyComb | TidyComb: Preparing drug combination data for DrugComb |
UpdateCell | Update local Cellosaurus XML file |
UpdateCid | Get "Preferred Compound" of "Non-live" compounds in PubChem |
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