MatchCellAcc: Match cell line name with cellosaurus accession

In DrugComb/TidyComb: Preparing drug combination data for DrugComb

Match cell line name with cellosaurus accession

Description

Match cell line name with cellosaurus accession

Usage

MatchCellAcc(names, file)

Arguments

names	A vector of charactors contains names of interested cell lines
file	The path to Cellosaurus XML file which was posted on https://web.expasy.org/cellosaurus/

Value

A data frame contains:

• input_name The input cell lines names

• cellosaurus_accession The cellosaurus accession matched with cell line names.

• all_name All names for the mached cell lines, including primary name and synonyms.

Author(s)

Jing Tang [e-mail] Shuyu Zheng [e-mail]

DrugComb/TidyComb documentation built on June 22, 2022, 2:49 a.m.