GetDisease: Extract the disease information of one cell line.

In DrugComb/TidyComb: Preparing drug combination data for DrugComb

Extract the disease information of one cell line.

Description

GetDisease extracts the cell line associated diseases and NCI Thesaurus entry code from one cell-line-list node in Cellosaurus xml file.

Usage

GetDisease(node)

Arguments

node	An XMLInternalElementNode with only one cell line's information which was extracted from Cellosaurus xml file.

Details

This function extract the cell line associated disease and disease ID (NCI Thesaurus entry code) which the cell line associated with from an XMLIntervalElementNode object extracted from Cellosaurus xml file. Combining this function with apply or sapply can extract disease information from an XMLNodeSet object.

Value

A data frame contains two variables:

disease	name of the cell line associated disease.
disease_id	NCI Thesaurus entry code of the associated disease.

Author(s)

Jing Tang [e-mail] Shuyu Zheng [e-mail]

DrugComb/TidyComb documentation built on June 22, 2022, 2:49 a.m.