GetCellName: Extract primary name and synonyms of one cell line.

In DrugComb/TidyComb: Preparing drug combination data for DrugComb

Extract primary name and synonyms of one cell line.

Description

GetCellName extract primary name and synonyms from only one cell-line-list node in Cellosaurus xml file.

Usage

GetCellName(node)

Arguments

node	An XMLInternalElementNode with only one cell-line-list node extracted from Cellosaurus xml file.

Details

This function extracts the primary name (as "name") and synonyms (as "synonyms") of an XMLIntervalElementNode object containing one cell-line-list node extracted from Cellosaurus xml file.

If you'd like to extract information from multiple cell-line-list nodes, combining this function with xpathSapply or sapply is recommanded.

Value

A data frame contains two variables:

• name the primary name of cell line.

• synonyms synonyms of the cell line separated by semicolons.

Author(s)

Jing Tang [e-mail] Shuyu Zheng [e-mail]

DrugComb/TidyComb documentation built on June 22, 2022, 2:49 a.m.