GetCellInfo: Extract cell line information
In DrugComb/TidyComb: Preparing drug combination data for DrugComb

GetCellInfo

R Documentation

Extract cell line information

Description

This function will extract the primary name, synonyms, Cellosausurs Accession ID, disease, disease_id, tissue) of the inputted cell lines and wrap them into a data frame.

Usage

GetCellInfo(accessions, parsed_cell_file)

Arguments

`accessions`	A vector containing the Cellosaurus accessions for searching
`parsed_cell_file`	An "XMLInternalElementNode" extracted from the Cellosaurus XML file by function `ParseCell`

Value

A data frame containing 6 columns:

name primary name of cell lines.
synonyms the synonyms of cell lines.
cellosaurus_accession Cellosaurus Accession for cell lines.
disease_name diseases that are associated with the cell lines
disease_id NCI Thesaurus entry code of the diseases.
tissue Tissues that the cell line generated from. Following the CCLE category.