API for GabrielHoffman/decorate
Differential Epigenetic Coregulation Test
| Global functions | |
|---|---|
| .countClusters | Source code |
| .evalDiffCorr | Man page Source code |
| [,epiclustDiscreteListContain,ANY,ANY,ANY-method | Man page |
| `:=` | Source code |
| addLegend | Source code |
| boxM | Man page Source code |
| boxM_basic | Source code |
| boxM_fast | Man page Source code Source code |
| boxM_permute | Man page Source code |
| clustIter | Source code |
| clustIterBatch | Source code |
| collapseClusters | Man page Source code |
| combineResults | Man page Source code |
| corSubsetPairs | Man page Source code Source code |
| corrIterBatch | Source code |
| corrMatrix.test | Man page Source code |
| countClusters | Man page |
| countClusters,epiclustDiscreteList-method | Man page |
| countClusters,epiclustDiscreteListContain-method | Man page |
| createClusters | Man page Source code |
| createCorrelationMatrix | Man page Source code |
| decorateData | Man page |
| delaneau.score | Man page Source code |
| delaneau.test | Man page Source code |
| det_partial | Source code |
| epiclust-class | Man page |
| epiclustDiscreteList-class | Man page |
| epiclustDiscreteListContain-class | Man page |
| epiclustList-class | Man page |
| evalDiffCorr | Man page |
| evalDiffCorr,EList,ANY,GRanges,list,ANY,ANY,ANY,ANY,ANY,ANY,ANY- | Man page |
| evalDiffCorr,EList,ANY,GRanges,list-method | Man page |
| evalDiffCorr,data.frame,ANY,GRanges,list,ANY,ANY,ANY,ANY,ANY,ANY | Man page |
| evalDiffCorr,data.frame,ANY,GRanges,list-method | Man page |
| evalDiffCorr,matrix,ANY,GRanges,list,ANY,ANY,ANY,ANY,ANY,ANY,ANY | Man page |
| evalDiffCorr,matrix,ANY,GRanges,list-method | Man page |
| evaluateCorrDecay | Man page Source code |
| extractCorrelationScores | Man page Source code |
| filterClusters | Man page Source code |
| getClusterNames | Man page Source code |
| getClusterRanges | Man page Source code |
| getClusterSubset | Source code |
| getFeaturesInCluster | Man page Source code |
| getFeaturesInClusterList | Man page Source code |
| getPeakDistances | Man page Source code |
| getSubset | Man page |
| getSubset,epiclust,GRanges-method | Man page |
| getSubset,epiclustList,GRanges-method | Man page |
| get_exon_coords | Man page Source code |
| ggplot_by_sampling | Man page Source code |
| jaccard | Man page Source code |
| makeImageRect | Man page Source code |
| metadata | Man page |
| plotClusterSegments | Man page Source code |
| plotCompareCorr | Man page Source code |
| plotCorrDecay | Man page Source code |
| plotCorrTriangle | Man page Source code |
| plotDecorate | Man page Source code |
| plotDensityPoints | Man page Source code |
| plotEnsGenes | Man page Source code |
| plotGenes | Man page |
| plotPairwiseScatter | Man page Source code |
| plotScatterPairs | Man page Source code |
| retainClusters | Man page Source code |
| runFastStat | Man page Source code |
| runOrderedClustering | Man page Source code |
| runOrderedClusteringGenome | Man page Source code |
| runPermutedData | Man page Source code |
| runSled2 | Source code |
| sLEDresults-class | Man page |
| scoreClusters | Man page Source code |
| simData | Man page |
| simLocation | Man page |
| sle.score | Man page Source code |
| sle.test | Man page Source code |
| summary,sLEDresults-method | Man page |
| whichCluster | Man page Source code |
