countClusters-methods: Count clusters on each chromosome

In GabrielHoffman/decorate: Differential Epigenetic Coregulation Test

Count clusters on each chromosome

Description

Count clusters on each chromosome

Usage

countClusters(treeListClusters)

## S4 method for signature 'epiclustDiscreteList'
countClusters(treeListClusters)

## S4 method for signature 'epiclustDiscreteListContain'
countClusters(treeListClusters)

Arguments

treeListClusters

from createClusters()

Value

count number of clusters on each chromsome

Examples

library(GenomicRanges)

data('decorateData')

# Evaluate hierarchical clustering
treeList = runOrderedClusteringGenome( simData, simLocation ) 

# Choose cutoffs and return clusters
treeListClusters = createClusters( treeList )

# Count clusters on each chromsome
countClusters( treeListClusters )

GabrielHoffman/decorate documentation built on May 23, 2023, 1:29 a.m.