countClusters-methods: Count clusters on each chromosome

Description Usage Arguments Value Examples

Description

Count clusters on each chromosome

Usage

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countClusters(treeListClusters)

## S4 method for signature 'epiclustDiscreteList'
countClusters(treeListClusters)

## S4 method for signature 'epiclustDiscreteListContain'
countClusters(treeListClusters)

Arguments

treeListClusters

from createClusters()

Value

count number of clusters on each chromsome

Examples

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library(GenomicRanges)

data('decorateData')

# Evaluate hierarchical clustering
treeList = runOrderedClusteringGenome( simData, simLocation ) 

# Choose cutoffs and return clusters
treeListClusters = createClusters( treeList )

# Count clusters on each chromsome
countClusters( treeListClusters )

GabrielHoffman/decorate documentation built on Aug. 8, 2019, 1:48 p.m.