README.md

decorate: Differential Epigenetic Correlation Test

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Install

library(devtools)

# first install sLED
install_github("lingxuez/sLED")

# Install decorate
#   first, check for Bioconductor
if (!requireNamespace("BiocManager", quietly = TRUE)){
    cat("Please install Bioconductor before continuing:\n")
    cat("see http://bioconductor.org/install/\n\n")
}else{
    install_github('GabrielHoffman/decorate', repos=BiocManager::repositories())
}   

Dependencies

Depending on your system, you may need to install these system dependencies first: - udunits - proj - gdal - geos

Mac OS X
brew install udunits proj gdal geos
Ubuntu
apt-get install libudunits2-dev libproj-dev proj-data proj-bin libgeos-dev libgeos-c1v5 libgdal-dev
CentOS
yum install udunits2-devel
yum install proj-devel
yum install gdal-devel
yum install geos-devel
Windows

decorate should install on Windows without needing to install these dependencies.

Vignette: run example analysis

Manual

Simulations and properties of methods

Data analysis from manuscript

Results files

Analysis code



GabrielHoffman/decorate documentation built on July 26, 2021, 12:18 a.m.