README.md

decorate: Differential Epigenetic Coregeulation Test

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Install

library(devtools)

# first install sLED
install_github("lingxuez/sLED")

# Install decorate
#   first, check for Bioconductor
if (!requireNamespace("BiocManager", quietly = TRUE)){
    cat("Please install Bioconductor before continuing:\n")
    cat("see http://bioconductor.org/install/\n\n")
}else{
    install_github('GabrielHoffman/decorate', repos=BiocManager::repositories())
}   

Dependencies

Depending on your system, you may need to install these dependencies first: - udunits - proj - gdal - geos

Mac OS X

brew install udunits proj gdal geos

Ubuntu

sudo apt-get install libudunits2-dev libproj-dev proj-data proj-bin libgeos-dev libgeos-c1v5 libgdal-dev

Windows

I have not tried to install these dependencies on Windows, but decorate should install on Windows with no issues.

Vignette: Run example analysis



GabrielHoffman/decorate documentation built on Aug. 8, 2019, 1:48 p.m.